Cis-meQTLs across different cancer types

In cis-meQTL analysis, we identified 8,028,964 cis-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

 

e.g., "BLCA"
e.g., "rs11047888"
e.g., "cg25763538"
e.g., "KRAS"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
P-valule
Display
BLCA rs16905145 chr8:91687046 T/C cg16814680 chr8:91681699 NA -1.19 -35.98 -0.88 1.99E-124 Box Plot
BLCA rs1723156 chr2:30675826 A/G cg12454169 chr2:30669597 LCLAT1 1.24 29.57 0.83 1.46E-100 Box Plot
BLCA rs1723167 chr2:30714648 T/C cg12454169 chr2:30669597 LCLAT1 1.26 31.67 0.85 1.24E-108 Box Plot
BLCA rs17247505 chr2:33947470 G/T cg04131969 chr2:33951647 MYADML -1.16 -29.99 -0.84 3.37E-102 Box Plot
BLCA rs17528667 chr1:227201770 C/T cg10327440 chr1:227177885 CDC42BPA -1.11 -29.57 -0.83 1.38E-100 Box Plot
BLCA rs17600627 chr1:227201449 A/G cg10327440 chr1:227177885 CDC42BPA -1.12 -29.93 -0.84 5.43E-102 Box Plot
BLCA rs17600669 chr1:227201871 A/G cg10327440 chr1:227177885 CDC42BPA -1.11 -29.53 -0.83 1.95E-100 Box Plot
BLCA rs1838681 chr5:13676164 A/C cg27586797 chr5:13664584 NA -1.1 -30.35 -0.84 1.39E-103 Box Plot
BLCA rs1900140 chr5:13670542 G/T cg27586797 chr5:13664584 NA -1.08 -30.49 -0.84 3.83E-104 Box Plot
BLCA rs1929862 chr1:227199718 G/A cg10327440 chr1:227177885 CDC42BPA -1.14 -31.53 -0.85 3.99E-108 Box Plot
BLCA rs1929863 chr1:227195728 C/T cg10327440 chr1:227177885 CDC42BPA -1.15 -32.24 -0.86 8.48E-111 Box Plot
BLCA rs1929864 chr1:227195500 T/G cg10327440 chr1:227177885 CDC42BPA -1.14 -31.89 -0.85 1.74E-109 Box Plot
BLCA rs2072499 chr1:156169610 A/G cg24450063 chr1:156163899 SLC25A44 1.16 29.64 0.84 7.49E-101 Box Plot
BLCA rs2253677 chr1:156171296 C/G cg24450063 chr1:156163899 SLC25A44 -1.18 -30.85 -0.85 1.62E-105 Box Plot
BLCA rs2266514 chr1:156173685 T/C cg24450063 chr1:156163899 SLC25A44 1.17 30.33 0.84 1.53E-103 Box Plot